{"version":1,"kind":"Article","sha256":"","slug":"808","location":"","dependencies":[],"doi":"10.54294/5jerhn","frontmatter":{"title":"CustusX: A Research Application for Image-Guided Therapy","abstract":"CustusX version 3 is an in-house application for research in image-guided therapy with a focus on intraoperative use and ultrasound imaging. It is built upon open source toolkits such as the Insight Toolkit (ITK), the Visualization Toolkit (VTK), Qt and others. CustusX has a layered architecture based on services, and is extensible through the use of plugins. Key features are a user interface configurable by the user, an abstraction of the VTK pipeline, cross-platform video acquisition including temporal calibration, and a patient model. This paper gives an overview of the architecture and a description of the key concepts.","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["software architecture","image guided therapy","ultrasound"],"authors":[{"name":"Askeland, Christian","email":"christian.askeland@sintef.no","affiliations":["SINTEF"],"corresponding":true},{"name":"Lindseth, Frank","email":"Frank.Lindseth@sintef.no","affiliations":[]},{"name":"Lervik Bakeng, Janne Beate","affiliations":[]},{"name":"Solberg, Ole Vegard","affiliations":[]},{"name":"Tangen, Geir Arne","affiliations":[]}],"date_submitted":"2011-05-31 04:30:24","external_publication_id":808,"revision_cids":["bafkreifj3i6k3ujrytain527xqvwm6js44d3sbxtscjvmk7ad723tnizdi"]},"mdast":{"type":"root"},"downloads":[{"url":"https://ipfs.desci.com/ipfs/bafkreievjjwun5yqzj4s6unxzqzqytlvch4ki62liaj3vmukhuhq7a6z2y","title":"root/insight-journal-metadata.json","filename":"insight-journal-metadata.json","extra":{"size_bytes":7541,"type":"file"}},{"url":"https://dweb.link/ipfs/bafkreieozwl7wwsqfrt2zd4cvvvlm7dnlieylyg3c57luwd5s3s33mousi","title":"root/article.pdf","filename":"article.pdf","extra":{"size_bytes":297781,"type":"file"}}],"references":{"cite":{"order":["ref1","ref2","ref3","ref4","ref5","ref6","ref7","ref8","ref9","ref10","ref11","ref12","ref13","ref14","ref15","ref16","ref17"]},"data":{"ref1":{"label":"ref1","enumerator":"1","url":"https://doi.org/10.1097/00006123-200012000-00021","html":"SonoWand, an ultrasound-based neuronavigation system+com/ 1+2000+47+1380+1379+A Gronningsaeter+A Kleven+S Ommedal+TE Aarseth+T Lie+F Lindseth+T Lango+G Unsgard"},"ref2":{"label":"ref2","enumerator":"2","url":"https://doi.org/10.1097/00006123-199901000-00056","html":"BrainLab VectorVision Neuronavigation System: Technology and Clinical Experiences in 131 Cases. Neurosurgery+1999+44+1+104+HK Gumprecht+DC Widenka+CB Lumenta"},"ref3":{"label":"ref3","enumerator":"3","url":"https://doi.org/10.1109/isbi.2006.1625012","html":": ITK, VTK, Pipelines, Grids and 3D Slicer as an Open Platform for the Medical Image Computing Community+org/ 1+2006+1+698+701+S Pieper+B Lorensen+W Schroeder+Kikinis R The NA-MIC Kit"},"ref4":{"label":"ref4","enumerator":"4","html":"The Visualization Toolkit User's Guide+2003+org/ 1+W.J. Schroeder+K.M. Martin+L.S. Avila+C.C. Law"},"ref5":{"label":"ref5","enumerator":"5","html":"org/ 1+2003+L. Ibanez+W. Schroeder+L. Ng+Cates"},"ref6":{"label":"ref6","enumerator":"6","url":"https://doi.org/10.1117/12.719562","html":"2+2007+org/ 1+K. Cleary+S. Aylward+J. Jomier+A. Enquobahrie+H. Zhang+IGSTK M. B. Blake"},"ref7":{"label":"ref7","enumerator":"7","url":"https://doi.org/10.1016/j.neuroimage.2006.01.015","html":"Gee, and Guido Gerig. User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability+org/ 1+1+3+1116+28+A. Paul+Sean Yushkevich+Ho"},"ref8":{"label":"ref8","enumerator":"8","html":"Design Patterns: Elements of Reusable Object-Oriented Software+Addison-Wesley 1994 2+Gamma"},"ref9":{"label":"ref9","enumerator":"9","html":"1996+RC. The Martin+Dependency Inversion Principle"},"ref10":{"label":"ref10","enumerator":"10","html":"Northern Digital Inc+com/ 2"},"ref11":{"label":"ref11","enumerator":"11","html":"Medicine (DICOM) PS 3 3+2+2009+Digital Imaging"},"ref12":{"label":"ref12","enumerator":"12","url":"https://doi.org/10.1016/j.media.2007.06.008","html":"Clinical validation of vessel based registration for correction of brain-shift+Medical Image Analysis+2007+11+6+3+684+I Reinertsen+F Lindseth+DL Collins"},"ref13":{"label":"ref13","enumerator":"13","url":"https://doi.org/10.1016/j.ultrasmedbio.2004.11.015","html":"A review of calibration techniques for freehand 3-D ultrasound systems+Ultrasound Med Biol+2005+31+3+471+L Mercier+T Langø+F Lindseth+DL Collins"},"ref14":{"label":"ref14","enumerator":"14","url":"https://doi.org/10.1007/978-3-540-68993-5_3","html":"Freehand 3D Ultrasound Calibration: A Review+In Advanced Imaging in Biology and Medicine+2008+3+84+P-W Hsu+RW Prager+AH Gee+GM Treece"},"ref15":{"label":"ref15","enumerator":"15","url":"https://doi.org/10.1109/26.103043","html":"Internet time synchronization: The Network Time Protocol+org/ 2+October 1991+1482+1493+D. Mills"},"ref16":{"label":"ref16","enumerator":"16","url":"https://doi.org/10.1016/s0301-5629(02)00735-4","html":"High-definition freehand 3-D ultrasound+Ultrasound Med Biol+2003+29+3+546+GM Treece+AH Gee+RW Prager+CJC Cash+LH Berman"},"ref17":{"label":"ref17","enumerator":"17","url":"https://doi.org/10.1109/tmi.2006.877097","html":"Calibration Method for 3D Ultrasound+IEEE Trans Med Imaging+2006+25+3+Rousseau F A Novel Temporal"}}}}