{"version":1,"kind":"Article","sha256":"","slug":"727","location":"","dependencies":[],"doi":"10.54294/bm3k71","frontmatter":{"title":"Adapting the ITK Registration Framework to Fit Parametric Image Models","abstract":"The image registration framework in the Insight Tookit offers a powerful body of code for finding the optimal spatial transform that registers one image with another. However, ITK currently lacks a way to fit parametric models of image pixel values to an input image. This document describes new classes that enable use of the registration framework to provide this capability. We describe a new base class, itk::ParametricImageSource, that defines an interface for parametric image sources. An adapter class itk::ImageToParametricImageSourceMetric that enables itk::ParametricImageSources to be hooked into the registration framework is also described. An example adapter class that enables the existing itk::GaussianImageSource to be used for image fitting is presented, and we demonstrate use of the classes by fitting a 2D Gaussian function to an image generated by the itk::GaussianImageSource class.","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["Gaussian fitting","parametric image models"],"authors":[{"name":"Quammen, Cory","email":"cquammen@cs.unc.edu","affiliations":["University of North Carolina at Chapel Hill"],"corresponding":true},{"name":"Taylor II, Russell M.","affiliations":[]}],"date_submitted":"2010-04-20 15:28:18","external_publication_id":727,"revision_cids":["bafkreif4n4zcww5rxpsznyh6bbns6bqmsq7s47imsex5afgszogvepavlq"],"github":"https://github.com/midas-journal/midas-journal-727.git"},"mdast":{"type":"root"},"downloads":[{"url":"https://pub.desci.com/ipfs/bafkreifivom7ppq42zdkxqcnlutcykh2rlvcoaabi7b5pa7g35njbxfw4u","title":"root/code/GaussianFitting2D/.#itkParametricGaussianImageSource.h","filename":".#itkParametricGaussianImageSource.h","extra":{"size_bytes":48,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreigwkfsspeifzjtxggafabui35f5y2ncy63xc5jpbjdo6eqlp7moym","title":"root/code/GaussianFitting2D/.DS_Store","filename":".DS_Store","extra":{"size_bytes":6148,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreiggt4f3vzvef4njd24gmms4fqabny3xt7jnp5445qunvosh5urwey","title":"root/code/GaussianFitting2D/CMakeLists.txt","filename":"CMakeLists.txt","extra":{"size_bytes":1564,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreigadiye3cgw42mypgfg6yabplfpcsb4x2vf2uop6mcfgnuraidspi","title":"root/code/GaussianFitting2D/GaussianFitting2DTest.cxx","filename":"GaussianFitting2DTest.cxx","extra":{"size_bytes":5564,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreidsuvum4ihhamba3w5xnnhyu3rhrxzjtzkfggnmwokhpg7ktzqjxa","title":"root/code/GaussianFitting2D/IJMacros.txt","filename":"IJMacros.txt","extra":{"size_bytes":3465,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreiftnhqr7vsi6btpb3qt6zjubvev4ya3jeig646m4izn4qwnjjru5m","title":"root/code/GaussianFitting2D/itkImageToParametricImageSourceMetric.h","filename":"itkImageToParametricImageSourceMetric.h","extra":{"size_bytes":8816,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreicasgxjoovwrh225tdv5mpkgmp7jplbcqyafakzwhul6tlsghcsre","title":"root/code/GaussianFitting2D/itkImageToParametricImageSourceMetric.txx","filename":"itkImageToParametricImageSourceMetric.txx","extra":{"size_bytes":10098,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreid2z4n77f3ztisp2jbxsjk7ylvel4caw3e7jf7wdmh4beyww6ipje","title":"root/code/GaussianFitting2D/itkParametricGaussianImageSource.h","filename":"itkParametricGaussianImageSource.h","extra":{"size_bytes":4048,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreifz7hrkbbsoqzvldz7y6byn4bsqmj3t6dllzw5f77ym7beqjiksby","title":"root/code/GaussianFitting2D/itkParametricGaussianImageSource.txx","filename":"itkParametricGaussianImageSource.txx","extra":{"size_bytes":2568,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreidj3esnyqs45xyxosm6zsroxtofvdndbyvq3sy64rkrgoktiaseqm","title":"root/code/GaussianFitting2D/itkParametricImageSource.h","filename":"itkParametricImageSource.h","extra":{"size_bytes":3311,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreig2fqtxrtvzsxfieglnbawusliec7z7kc44em2revnfz3uh6ayuwi","title":"root/code/GaussianFitting2D/itkParametricImageSource.txx","filename":"itkParametricImageSource.txx","extra":{"size_bytes":1722,"type":"file"}},{"url":"https://ipfs.desci.com/ipfs/bafkreic24xvskruk2oxkc6hdhn4vu5ni7pbwgwxruzkpgh5roil2td2gh4","title":"root/insight-journal-metadata.json","filename":"insight-journal-metadata.json","extra":{"size_bytes":4219,"type":"file"}},{"url":"https://dweb.link/ipfs/bafkreidut4nlfallefwhjnepo3e3tfrnqfdn2phiycmqk3x7vze66pkesu","title":"root/article.pdf","filename":"article.pdf","extra":{"size_bytes":129531,"type":"file"}}],"references":{"cite":{"order":["ref1","ref2","ref3"]},"data":{"ref1":{"label":"ref1","enumerator":"1","url":"https://doi.org/10.1126/science.1127344","html":"Imaging Intracellular Fluorescent Proteins at Nanometer Resolution. 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