{"version":1,"kind":"Article","sha256":"","slug":"706","location":"","dependencies":[],"doi":"10.54294/ttdjo3","thumbnail":"https://pub.desci.com/ipfs/bafkreighd42kq4xbdvaloqlp2bk7fbkr4s4l4t5vp4ntqmgzlfkuftmst4","frontmatter":{"title":"User Guide to The Computational Morphometry Toolkit","abstract":"This guide is intended as a very brief introduction of the main tools in the Computational Morphometry Toolkit (CMTK), which is available in source code and as precompiled binaries from http://www.nitrc.org/projects/cmtk/. The target audience of this document are CMTK users, who might use this document as a reference to the most common processing tasks, and prospective users, who may find this information useful to determine whether CMTK provides functionality that they can use. We focus in particular on a simplified workflow for deformation morphometry studies based on magnetic resonance images: DICOM conversion, artifact correction, affine and nonlinear image registration, reformatting, Jacobian determinant map generation, and statistical hypothesis testing.","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["toolkit","user guide","registration","morphometry","CMTK"],"authors":[{"name":"Rohlfing, Torsten","email":"torsten@synapse.sri.com","affiliations":["SRI International"],"corresponding":true}],"date_submitted":"2011-03-23 15:40:11","external_publication_id":706,"revision_cids":["bafkreies276mmyasegvzqwhrdu4kiqsmqmq3oy3udz2st6gdq6rbqfylpi"],"thumbnail":"https://pub.desci.com/ipfs/bafkreighd42kq4xbdvaloqlp2bk7fbkr4s4l4t5vp4ntqmgzlfkuftmst4"},"mdast":{"type":"root"},"downloads":[{"url":"https://ipfs.desci.com/ipfs/bafkreibp4c2karzzlg6hdg6c6je67bxhfhxecx5uwwtpy5uvtga6e2xk6u","title":"root/insight-journal-metadata.json","filename":"insight-journal-metadata.json","extra":{"size_bytes":13055,"type":"file"}},{"url":"https://dweb.link/ipfs/bafkreiafquohn3d3gguq75yw7z523evnanveujb62whamuflxhvfez25ze","title":"root/article.pdf","filename":"article.pdf","extra":{"size_bytes":375222,"type":"file"}}],"references":{"cite":{"order":["ref1","ref2","ref3","ref4","ref5","ref6","ref7","ref8","ref9","ref10","ref11","ref12","ref13","ref14","ref15","ref16","ref17","ref18","ref19","ref20","ref21","ref22","ref23","ref24","ref25","ref26","ref27","ref28","ref29","ref30","ref31"]},"data":{"ref1":{"label":"ref1","enumerator":"1","html":"The principal axes transformation - a method for image registration+” Journal of Nuclear Medicine+2+10+4+1722+1990+N. 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