{"version":1,"kind":"Article","sha256":"","slug":"649","location":"","dependencies":[],"doi":"10.54294/6nm8y4","frontmatter":{"title":"A generic computer assisted intervention plug-in module for 3D Slicer with multiple device support","abstract":"Various frameworks and toolkits have been proposed for rapid development of computer assisted intervention (CAI) software. In this paper, we investigate how the open-source 3D Slicer application framework can be used for this purpose. We defined common requirements for CAI software to evaluate and enhance 3D Slicer for interventional applications in general. 3D Slicer is found to be an appropriate end-user deployment environment for CAI software, as its built-in functions fulfill many requirements and missing functionalities can be conveniently added. We describe the implementation of a CAI software based on extending core 3D Slicer functions. Three enhancements are described in detail: the management of workflow, DICOM image transfer, and multiple views. The resulting software fulfills general CAI requirements and supports two different MRI-guided prostate biopsy systems (each with a different imaging mode, robotic manipulator and calibration method), thereby demonstrating the usability of Slicer for implementing different CAI applications.","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["Computer Assisted Intervention","3D Slicer","MRI guided prostate intervention"],"authors":[{"name":"Lassó, András","affiliations":[]},{"name":"Tokuda, Junichi","email":"tokuda@bwh.harvard.edu","affiliations":[]},{"name":"Vikal, Siddharth","affiliations":[]},{"name":"Tempany, Clare M","affiliations":[]},{"name":"Hata, Nobuhiko","affiliations":[]},{"name":"Fichtinger, Gabor","affiliations":[]}],"date_submitted":"2009-08-14 22:39:57","external_publication_id":649,"revision_cids":["bafkreifg6xxbnhfzz5ljaxc5abpfrcibr26trorx3nsljtubaoym54nloy"]},"mdast":{"type":"root"},"downloads":[{"url":"https://ipfs.desci.com/ipfs/bafkreicccqow5ajim343vknmnhwhfo3zvloa3hmv4lulnt4bftt5rq572e","title":"root/insight-journal-metadata.json","filename":"insight-journal-metadata.json","extra":{"size_bytes":9460,"type":"file"}},{"url":"https://dweb.link/ipfs/bafkreihuihk7wp3ged6d2l2cpxn5x2gt7yf3ki3n4wi23ftlr4sshmht2i","title":"root/article.pdf","filename":"article.pdf","extra":{"size_bytes":672213,"type":"file"}}],"references":{"cite":{"order":["ref1","ref2","ref3","ref4","ref5","ref6","ref7","ref8","ref9","ref10","ref11","ref12","ref13","ref14","ref15","ref16","ref17","ref18"]},"data":{"ref1":{"label":"ref1","enumerator":"1","url":"https://doi.org/10.1007/s10278-007-9054-3","html":"The imageguided surgery toolkit IGSTK: an open source C++ software toolkit+J Digit Imaging+20+Suppl 1+21+33+2007+A. Enquobahrie+L. Ibanez+D. Gobbi+F. Lindseth+Z. Yaniv+S. Aylward+J. Jomier+K. Cleary"},"ref2":{"label":"ref2","enumerator":"2","url":"https://doi.org/10.1117/12.706079","html":"Device connectivity for imageguided medical applications+Stud Health Technol Inform+2007+125+482+4+J. von Spiczak+D. Schmalstieg+C. Burghart+R. Kikinis"},"ref3":{"label":"ref3","enumerator":"3","url":"https://doi.org/10.1007/978-3-540-75759-7_7","html":"Data for Medical Image Computing+1926+E. Samset+A. Hans+S. DiMaio+R. Ellis+N. Hata+F. Jolesz+Intervention Computer-Assisted"},"ref4":{"label":"ref4","enumerator":"4","html":"The MIDAS Journal+B Vagvolgyi+P. Kazanzides.+R. Kumar+C. Hasser+R. Taylor"},"ref5":{"label":"ref5","enumerator":"5","url":"https://doi.org/10.1016/j.media.2005.04.005","html":"The Medical Imaging Interaction Toolkit. Med Image Anal+2005+9+6+594+604+I. Wolf+M. Vetter+T. Böttger+M. Nolden+M. Schöbinger+M. Hastenteufel"},"ref6":{"label":"ref6","enumerator":"6","url":"https://doi.org/10.1109/isbi.2006.1624960","html":"Development of a research interface for image guided intervention: Initial application to epilepsy neurosurgery+International Symposium on Biomedical Imaging ISBI+2006+490+3+X. Papademetris+M.+M. Neff+S. Flossman+N. Frielinghaus+H. Zaveri+H. Blumenfeld"},"ref7":{"label":"ref7","enumerator":"7","url":"https://doi.org/10.1109/isbi.2004.1398617","html":"3D Slicer+1+632+635+April 2004+S. Pieper+M. Halle+R. Kikinis"},"ref8":{"label":"ref8","enumerator":"8","url":"https://doi.org/10.1002/jmri.1139","html":"An integrated visualization system for surgical planning and guidance using image fusion and an open MR+J Magn Reson Imaging+2001+13+6+967+75+DT. Gering+A. Nabavi+R. Kikinis+N. Hata+WM. Wells. LJ. O'Donnell"},"ref9":{"label":"ref9","enumerator":"9","url":"https://doi.org/10.1148/radiology.220.1.r01jl44263","html":"MR imaging-guided prostate biopsy with surgical navigation software: device validation and feasibility+Radiology+220+1+263+8+N. Hata+M. Jinzaki+D. Kacher+R. Cormak+D. Gering+A. Nabavi+S.G. Silverman+D A.V. Kikinis+R. Jolesz+F.A. Tempany+C.M."},"ref10":{"label":"ref10","enumerator":"10","url":"https://doi.org/10.1016/s1076-6332(03)00508-7","html":"Advanced computer assistance for magnetic resonance-guided microwave thermocoagulation of liver tumors+Acad Radiol+2003+10+12+1442+9+S. Morikawa+T. Inubushi+T. Kurumi+S. Naka+K. Sato+K. Demura+J. Tokuda+N. Hata"},"ref11":{"label":"ref11","enumerator":"11","url":"https://doi.org/10.1002/rcs.274","html":"OpenIGTLink: An Open Network Protocol for Image-Guided Therapy Environment+Int J Med Robot Comput Assist Surg+2009+J. Tokuda+X. Papademetris+Z. Yaniv+L. Ibanez+J. Blevins+J. Arata+A. Golby+T. Kapur+N. Hata."},"ref12":{"label":"ref12","enumerator":"12","url":"https://doi.org/10.1109/tmech.2008.924044","html":"MRI-Compatible Pneumatic Robot for Transperineal Prostate Needle Placement+2008+13+3+295+30+I. GS. Fischer+C. Iordachita+J. Csoma+N. Tokuda+G. Fichtinger. Hata"},"ref13":{"label":"ref13","enumerator":"13","url":"https://doi.org/10.1007/978-3-540-75759-7_8","html":"Fichtinger, LL. Whitcomb. Design and Preliminary Accuracy Studies of an MRI-Guided Transrectal Prostate Intervention System Medical Image Computing+2007+October 29 - November 2+4792+59+67+A. Krieger+C. Csoma+I. Iordachita+G.+Intervention - MICCAI Computer-Assisted+II Part"},"ref14":{"label":"ref14","enumerator":"14","url":"https://doi.org/10.1109/ieeestd.1998.88286","html":"-1998, IEEE Recommended Practice for Software Requirements Specifications+1998+IEEE Std"},"ref15":{"label":"ref15","enumerator":"15","url":"https://doi.org/10.1016/j.neuroimage.2007.04.026","html":"NeuroImage+Challenges in image-guided therapy system design+2007+37+S144+S151+S. DiMaio+K. Cleary+S. Aylward+P. Kazanzides+K. Vosburgh+R. Ellis+J. Duncan+K. Farahani+H. Lemke+T. Peters+W. Lorensen+D. Gobbi+J. Haller+L. Clarke+S. Pizer+R. Taylor+G. Galloway+N. Fichtinger+K. Hata+C. Lawson+R. Tempany+F. Kikinis+Jolesz"},"ref16":{"label":"ref16","enumerator":"16","html":"The National Electrical Manufacturers Association (NEMA). Digital Imaging and Communication in Medicine (DICOM)+NEMA Publications PS 31-318+2007"},"ref17":{"label":"ref17","enumerator":"17","url":"https://doi.org/10.1007/s11548-006-0051-7","html":"The operating room and the need for an IT infrastructure and standards+International Journal of Computer Assisted Radiology and Surgery+2006+1+3+117+21+H. Lemke+M. Vannier"},"ref18":{"label":"ref18","enumerator":"18","html":"[18] DCMTK - DICOM Toolkit, version 3.5.4+2005"}}}}