{"version":1,"kind":"Article","sha256":"","slug":"180","location":"","dependencies":[],"doi":"10.54294/hmb052","frontmatter":{"title":"BRAINSFit: Mutual Information Registrations of Whole-Brain 3D Images, Using the Insight Toolkit","abstract":"The University of Iowa’s Psychiatric Iowa Neuroimaging Consortium (PINC) has developed a program for mutual information registration of 3D brain imaging data using ITK classes, called BRAINSFit. We have written a helper class, itk::MultiModal3DMutualRegistrationHelper to simplify implementation and testing of different transform representations and optimizers. We have added a transform meeting the ITK standard, itk::ScaleVersor3DTransform. BRAINSFit is based on the registration examples from ITK, but adds new features, including the ability to employ different transform representations and optimization functions. \r\nOur goal was to determine best practices for registering 3D rigid multimodal MRI of the human brain. A version of the current program is employed here at PINC daily for automated processing of acquired brain images.\r\n\r\nThis project is managed on the NITRC site. http://www.nitrc.org/projects/multimodereg/\r\n\r\nOn the NITRC website, you can acquire the latest source code via SVN, or by downloading a compressed file which is generated every night. Binary versions are also available.\r\n","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["Registration","Mutual Information"],"authors":[{"name":"Johnson, Hans J","email":"hans-johnson@uiowa.edu","affiliations":[]},{"name":"Harris, Gregory","email":"gregory-harris@uiowa.edu","affiliations":[]},{"name":"Williams, Kent","email":"norman-k-williams@uiowa.edu","affiliations":["university of iowa"],"corresponding":true}],"date_submitted":"2007-10-05T15:22:51Z","external_publication_id":180,"revision_cids":["bafkreidd56je3r67aqecqi3o4kdohdnpwhjtziqbvf43irwdkecbtbx7da"],"github":"https://github.com/midas-journal/midas-journal-180.git"},"mdast":{"type":"root"},"downloads":[{"url":"https://ipfs.desci.com/ipfs/bafkreibmy3dws6vor3m7upehafq56ag6zekdj3zwxnkfpt3hm3f45wlwue","title":"root/insight-journal-metadata.json","filename":"insight-journal-metadata.json","extra":{"size_bytes":4744,"type":"file"}},{"url":"https://dweb.link/ipfs/bafkreiaj6krchopeqgrbtwkzpprnspn4slady6dbr7swtdvnlolipa5lam","title":"root/article.pdf","filename":"article.pdf","extra":{"size_bytes":143693,"type":"file"}}],"references":{"cite":{"order":["ref1","ref2","ref3"]},"data":{"ref1":{"label":"ref1","enumerator":"1","html":"The ITK Software Guide: The Insight Segmentation and Registration Toolkit (version 1.4)+September 2003+(document), 1+Luis Ibanez+Josh Cates"},"ref2":{"label":"ref2","enumerator":"2","url":"https://doi.org/10.1016/s0895-6111(02)00011-3","html":"Structural MR image processing using the BRAINS2 toolbox+Computerized Medical Imaging and Graphics+26+251+64+2002+V.A. Magnotta+N.C. Andreasen+D. Heckel"},"ref3":{"label":"ref3","enumerator":"3","url":"https://doi.org/10.1109/isbi.2006.1625012","html":"The na-mic kit: Itk, vtk, pipelines, grids and 3d slicer as an open platform for the medical image computing community+Proceedings of IEEE International Symposium on BioMedical Imaging: From Nano to Macro+March 2006+698+701+Steve Pieper"}}}}