{"version":1,"kind":"Article","sha256":"","slug":"166","location":"","dependencies":[],"doi":"10.54294/9lhq05","frontmatter":{"title":"A Framework for Comparison and Evaluation of Nonlinear Intra-Subject Image Registration Algorithms","abstract":"Performance validation of nonlinear registration algorithms is a difficult problem due to the lack of a suitable ground truth in most applications. However, the ill-posed nature of the nonlinear registration problem and the large space of possible solutions makes the quantitative evaluation of algorithms extremely\r\nimportant. We argue that finding a standardized way of performing evaluation and comparing existing and new algorithms currently is more important than inventing novel methods. While there are already existing evaluation frameworks for nonlinear inter-subject brain registration applications, there is still a lack of protocols for intra-subject studies or soft tissue organs. In this work we present\r\nsuch a framework which is designed in an ”open-source” and ”open-data” manner around the Insight Segmentation & Registration Toolkit. The goal of our work is to provide the research community with the basis framework that should be extended by interested people in a community effort to gain importance for evaluation studies. We demonstrate our proposed framework on a sample evaluation and release its implementation and associated tools to the public domain.","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["nonlinear registration","evaluation"],"authors":[{"name":"Urschler, Martin","email":"urschler@icg.tu-graz.ac.at","affiliations":["Institute for Computer Graphics and Vision, Graz University of Technology, Austria"],"corresponding":true},{"name":"Kluckner, Stefan","affiliations":[]},{"name":"Bischof, Horst","affiliations":[]}],"date_submitted":"2007-07-15T17:57:53Z","external_publication_id":166,"revision_cids":["bafkreia55e7ai5dnig6mxr4vxsgod6lfie4sultph7q67nizrreor2b7wy"]},"mdast":{"type":"root"},"downloads":[{"url":"https://pub.desci.com/ipfs/bafkreiacvpv4lkdde7kwywklnhcunorhepccja7nspczo6kn3yqqbqzrda","title":"root/code/CodeSubmission/ApplyDisplacementFieldTransform.cpp","filename":"ApplyDisplacementFieldTransform.cpp","extra":{"size_bytes":6612,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreibahvl67vcpdpy32ptiedcxddmsw7omojm4v743yxuvalyvtj7k5m","title":"root/code/CodeSubmission/ApplySimulatedBreathingTransformation.cxx","filename":"ApplySimulatedBreathingTransformation.cxx","extra":{"size_bytes":7669,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreibyurtudam4mrohbrjebcqk7akvoaeydobz3vd424ysqeh7ybgwqa","title":"root/code/CodeSubmission/ApplySimulatedBreathingTransformationWithIntensityVariation.cxx","filename":"ApplySimulatedBreathingTransformationWithIntensityVariation.cxx","extra":{"size_bytes":13004,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreib35kykcyeio3xd6f7aw5pnufs4pe4l365kuqh6oc5ndbscenvd5y","title":"root/code/CodeSubmission/ApplySyntheticTPSTransform.cxx","filename":"ApplySyntheticTPSTransform.cxx","extra":{"size_bytes":8086,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreieckn7capqcmgqxlvx5qmrdkjczvnqg7gmjql6akee3fyfel44lqm","title":"root/code/CodeSubmission/ApplyUniformPeriodicTransform.cxx","filename":"ApplyUniformPeriodicTransform.cxx","extra":{"size_bytes":4994,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreihwtxefj7lqfdjyirjbducytxfi5s66h4rijbm4a2txwsw7dthcrq","title":"root/code/CodeSubmission/CMakeLists.txt","filename":"CMakeLists.txt","extra":{"size_bytes":3385,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreifwod5jwpwatmk5isqgrhtcselowi2na74ivxym644hb5noffpz3e","title":"root/code/CodeSubmission/CTCurvatureRegistration.cxx","filename":"CTCurvatureRegistration.cxx","extra":{"size_bytes":1048,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreifvduw7mqoit4cufywuzmioeus4r4mx3sfu4r7ppqp4q77ykaxw7y","title":"root/code/CodeSubmission/CTCurvatureRegistration.h","filename":"CTCurvatureRegistration.h","extra":{"size_bytes":2566,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreidga3ra6i4whkepfyhmimirnxgs2ra5qh6u72p6utzhjh7doqgq24","title":"root/code/CodeSubmission/CTCurvatureRegistration.txx","filename":"CTCurvatureRegistration.txx","extra":{"size_bytes":6386,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreiet7h27nusdn725yqjnpmnytokksy4qc2zogtqyz26mtvvkm73dem","title":"root/code/CodeSubmission/CTDiffeomorphicDemonsRegistration.cxx","filename":"CTDiffeomorphicDemonsRegistration.cxx","extra":{"size_bytes":1098,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreihai2fbobmc3glll7egivbygqogbrabdgpyq6tjpj2vmi4mto5kda","title":"root/code/CodeSubmission/CTDiffeomorphicDemonsRegistration.h","filename":"CTDiffeomorphicDemonsRegistration.h","extra":{"size_bytes":2013,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreig5cywupbmuyqkyd5hfp355i276mh44mscm6ewkgpklmujbbzow7q","title":"root/code/CodeSubmission/CTDiffeomorphicDemonsRegistration.txx","filename":"CTDiffeomorphicDemonsRegistration.txx","extra":{"size_bytes":19516,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreick5v7ggeklbzrb36m32idrz6ls5jqqezo44oyiwfbazuywia5xle","title":"root/code/CodeSubmission/CTFastBlockMatchingRegistration.cxx","filename":"CTFastBlockMatchingRegistration.cxx","extra":{"size_bytes":1090,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreigi7hdodhypimsfsjynhchfqslnisz7dpalldhxdkm6oomt6burm4","title":"root/code/CodeSubmission/CTFastBlockMatchingRegistration.h","filename":"CTFastBlockMatchingRegistration.h","extra":{"size_bytes":1796,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreicafxbpa7jz6xmmkeze2u3tzglganacufqcacjtppwhwh5wsz224i","title":"root/code/CodeSubmission/CTFastBlockMatchingRegistration.txx","filename":"CTFastBlockMatchingRegistration.txx","extra":{"size_bytes":4090,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreiabidpxa4znhinloymjgzuvarzlmri4oeei2smsyjcuz2lhzukyma","title":"root/code/CodeSubmission/CTLevelSetMotionRegistration.cxx","filename":"CTLevelSetMotionRegistration.cxx","extra":{"size_bytes":1075,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreic4jtl3grsczs5sy2gk4z3kwgr7tyygrqx3h6ddcv73dr2j6ihyum","title":"root/code/CodeSubmission/CTLevelSetMotionRegistration.h","filename":"CTLevelSetMotionRegistration.h","extra":{"size_bytes":2703,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreicwtcips3uxyougsfo7v6hi73xmtjvlbl4w73m5ppkbzijfhpqcfy","title":"root/code/CodeSubmission/CTLevelSetMotionRegistration.txx","filename":"CTLevelSetMotionRegistration.txx","extra":{"size_bytes":7409,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreid4aks75bf3xpfdh4ukprqrfu6e7qq5naseczppqlpvdou7z52e64","title":"root/code/CodeSubmission/CTNonlinearRegistrationBase.cxx","filename":"CTNo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