{"version":1,"kind":"Article","sha256":"","slug":"118","location":"","dependencies":[],"doi":"10.54294/k9nj7c","frontmatter":{"title":"Support for \"cub\" image format","abstract":"VoxBo (www.voxbo.org) is a distributed processing framework, developed at the Center of Functional Neuroimaging at the University of Penssylvania, with the purpose of processing and analyzing brain functional MRI data. \r\nVoxBo is written in C++, and it is escentially a fair translation of some SPM functionality, originally written in Matlab. Along with the software, VoxBo defines two new image formats:\r\n1) .cub, a 3D image format, used for anatomical data and single EPI frames. It is important to notice that this format defines a proper origin field, lacking, for instance, in Analyze.\r\n2) .tes, a 4D image format, designed to contain the temporal EPI information. It is worth noticing that this format organizes the voxels in such a way to optimize longitudinal (temporal) voxel access.\r\nFurthermore, the tes format is compressed through encoding of the functional voxels alone, i.e., background voxels are not stored for each frame, but only for the first one.\r\n\r\nIn this work we present the necessary IO classes that allow ImageFileReader and ImageFileWriter to properly identify, read and write .cub files only. We will provide .tes support in a subsequent work.\r\nThis effort is carried out with the purpose of letting VoxBo implementors to take advantage of ITK's power and overcome the limitations currently afflicting VoxBo.","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["Image file format","VoxBo","cub"],"authors":[{"name":"Burstein, Pablo D.","email":"pablob@grasp.cis.upenn.edu","affiliations":["University of Pennsylvania"],"corresponding":true},{"name":"Yushkevich, Paul","email":"pauly@despammed.com","affiliations":[]},{"name":"Gee, James C.","email":"gee@mail.med.upenn.edu","affiliations":[]}],"date_submitted":"2006-08-21T16:59:23Z","external_publication_id":118,"revision_cids":["bafkreibelddbg3l235fkfgfqrnv7rx4uffal65ofsjii37o4rz32tpsm4a"]},"mdast":{"type":"root"},"downloads":[{"url":"https://ipfs.desci.com/ipfs/bafkreialjfnv67ycyb3cg3aullcyux2cphab3sy3hmkfykvzd3dyafe6wm","title":"root/reviews.md","filename":"reviews.md","extra":{"size_bytes":6162,"type":"file"}},{"url":"https://ipfs.desci.com/ipfs/bafkreihrhmrwquwn5uurwfd4krnkitimsz7lnlmlrr2cb4tnxhspppcpyi","title":"root/insight-journal-metadata.json","filename":"insight-journal-metadata.json","extra":{"size_bytes":11078,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreifmm5jng5ngvxcnno6ppsxevgcv6rf546b7ycurkuamt5r74r7ete","title":"root/code/CMakeLists.txt","filename":"CMakeLists.txt","extra":{"size_bytes":340,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreif3g6rirufo5s7hrymqjfcjq3wb2iq6xjua2batot5gw55lvxasbe","title":"root/code/ConvertImage.cxx","filename":"ConvertImage.cxx","extra":{"size_bytes":1872,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreiaap7rqoaqmpls52av44lxzx5rtsguf2ayzinzap5y3y7hgpdxnvq","title":"root/code/itkVoxBoCUBImageIO.cxx","filename":"itkVoxBoCUBImageIO.cxx","extra":{"size_bytes":23265,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreie22hku2ynxnbotxofcc6bbp7fomxet6crr2l6lvbnovgmwemzxjq","title":"root/code/itkVoxBoCUBImageIO.h","filename":"itkVoxBoCUBImageIO.h","extra":{"size_bytes":4062,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreihy6irfqlllxix235rmv6hxt22htcuuk3zwp7fk4vlawh4keg6gmm","title":"root/code/itkVoxBoCUBImageIOFactory.cxx","filename":"itkVoxBoCUBImageIOFactory.cxx","extra":{"size_bytes":1498,"type":"file"}},{"url":"https://pub.desci.com/ipfs/bafkreigplr5fg2524kfpuumm4nlqnk3re47tzrs5lgeymvm34zpyabzv5q","title":"root/code/itkVoxBoCUBImageIOFactory.h","filename":"itkVoxBoCUBImageIOFactory.h","extra":{"size_bytes":2124,"type":"file"}},{"url":"https://dweb.link/ipfs/bafkreickjuw54wpdq6q3wnkebmgyi2fke7brxh2cfblpbwnrt3zdb7ywde","title":"root/article.pdf","filename":"article.pdf","extra":{"size_bytes":74095,"type":"file"}}],"references":{"cite":{"order":["ref1","ref2"]},"data":{"ref1":{"label":"ref1","enumerator":"1","html":"The ITK Software Guide: The Insight Segmentation and Registration Toolkit. USA+2000+Luis Ibanez+NG Lydia+Josh Cates"},"ref2":{"label":"ref2","enumerator":"2","html":"voxbo.org. 1"}}}}