{"version":1,"kind":"Article","sha256":"","slug":"23","location":"","dependencies":[],"doi":"10.54294/a4n8al","frontmatter":{"title":"Cerebral Cortical Thickness Estimation using the TINA\r\n Open-Source Image Analysis Environment","abstract":"This paper gives an overview of the use and development of the TINA open-source medical image analysis environment, with respect to the determination of human cerebral cortical thickness estimation from magnetic resonance images. The ultimate aim of TINA is to provide a validated system where the source code and datasets are freely available in order to allow peer-validation of published results.","license":"You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode","keywords":["Cerebral Cortical Thickness","Medical Image Analysis"],"authors":[{"name":"Scott, Marietta L. J.","email":"marietta.scott@manchester.ac.uk","affiliations":["University of Manchester, UK"],"corresponding":true},{"name":"Bromiley, Paul A.","affiliations":[]},{"name":"Thacker, Neil A.","affiliations":[]}],"date_submitted":"2005-07-30T18:07:06Z","external_publication_id":23,"revision_cids":["bafkreibinc4vu3vrffoxlz7iupuuhl5rnk3lczs6ki7zepdutgdxonn5du"]},"mdast":{"type":"root"},"downloads":[{"url":"https://ipfs.desci.com/ipfs/bafkreif2pwynbwjtwyk23fq4ycbsofs7gybwh7yugz4ti2czd3u6oegw6e","title":"root/insight-journal-metadata.json","filename":"insight-journal-metadata.json","extra":{"size_bytes":17048,"type":"file"}},{"url":"https://ipfs.desci.com/ipfs/bafkreib4jxht6ppuflomzv44lxazusckvbyjqaopapkbj7b7kf5aanivzm","title":"root/reviews.md","filename":"reviews.md","extra":{"size_bytes":9679,"type":"file"}},{"url":"https://dweb.link/ipfs/bafkreiaxay4gfsvi6xdpiach3l6utb46erkofb2dgc4bjlenfymgzglcum","title":"root/article.pdf","filename":"article.pdf","extra":{"size_bytes":164240,"type":"file"}}],"references":{"cite":{"order":["ref1","ref2","ref3","ref4","ref5","ref6","ref7","ref8","ref9","ref10","ref11","ref12","ref13","ref14"]},"data":{"ref1":{"label":"ref1","enumerator":"1","url":"https://doi.org/10.1038/nn1008","html":"Mapping cortical change across the human life span+Nature Neuroscience+309+2003+315+E.R. Sowell+B.S. Petersen+P.M. Thompson"},"ref2":{"label":"ref2","enumerator":"2","url":"https://doi.org/10.1016/0197-4580(96)00005-x","html":"Topography of brain atrophy during normal aging and Alzheimer's disease+Neurobiol. Aging+513+1996+521+K.L. Double+G.M. Halliday+J.J. Krill+J.A. Harasty"},"ref3":{"label":"ref3","enumerator":"3","url":"https://doi.org/10.1093/brain/awg175","html":"Focal thinning of the cerebral cortex in multiple sclerosis+Brain+1734+2003+1744+M. Sailer+B. Fischl+D. Salat+C. Tempelmann"},"ref4":{"label":"ref4","enumerator":"4","url":"https://doi.org/10.1006/nimg.1999.0534","html":"-D extraction of inner and outer surfaces of cerebral cortex from MRI+NeuroImage+340+2000+356+MacDonald D.+N. Kabani+D. Avis+A.C. Evans"},"ref5":{"label":"ref5","enumerator":"5","url":"https://doi.org/10.1002/1097-0193(200009)11:1<12::aid-hbm20>3.0.co;2-k","html":"Three-dimensional mapping of cortical thickness using Laplace's equation+Hum. Br. Map+12+2000+32+S.E. Jones+B.R. Buchbinder+I. Aharon"},"ref6":{"label":"ref6","enumerator":"6","url":"https://doi.org/10.1007/11566489_108","html":"Robust Tissue Boundary Detection for Cerebral Cortical Thickness Estimation+MICCAI+2005+M.L.J. Scott+N.A. Thacker"},"ref7":{"label":"ref7","enumerator":"7","html":"Cerebral Cortical Thickness Measurements+Tina Memo+2004+007+M.L.J. Scott+N.A. Thacker"},"ref8":{"label":"ref8","enumerator":"8","html":"The Equal Variance Domain: Issues Surrounding the Use of Probability Densities in Algorithm Design+Tina Memo+2004+006+N.A. Thacker+P.A. Bromiley+E Trucco"},"ref9":{"label":"ref9","enumerator":"9","url":"https://doi.org/10.1006/nimg.2000.0652","html":"A validation study+NeuroImage+375+2001+380+N. Kabani+MacDonald D. Le+A.C. Evans+D Algorithm"},"ref10":{"label":"ref10","enumerator":"10","url":"https://doi.org/10.1006/nimg.2001.0770","html":": \\Voxel-based morphometry\" should not be used with imperfectly registered images+NeuroImage+1454+2001+1462+Bookstein F.L."},"ref11":{"label":"ref11","enumerator":"11","url":"https://doi.org/10.1148/radiol.2241010419","html":"Dementing disorders: Volumetric measurement of cerebrospinal uid to distinguish normal from pathologic ndings - Feasibility study+Radiology+278+2002+285+N.A. Thacker+A.R. Varma+D. Bathgate+S. Stivaros"},"ref12":{"label":"ref12","enumerator":"12","url":"https://doi.org/10.1073/pnas.88.7.2845","html":"Gender di erences in age e ect on brain atrophy measured by magnetic resonace imaging+Proc. Natl. Acad. Sci. USA+2845+1991+2849+R.C. Gur+Mozley P.D.+S.M. Resnick+G.L. Gottlieb"},"ref13":{"label":"ref13","enumerator":"13","html":"Quantitative Volumetric Analysis of Brain MR: Normative Database Spanning 5 Decades of Life+AJNR+241+1995+251+Blatter D.D.+E.D. Bigler+S.D. Gale"},"ref14":{"label":"ref14","enumerator":"14","url":"https://doi.org/10.1212/wnl.51.6.1555","html":"Brain volume preserved in healthy elderly through the eleventh decade+Neurology+1555+1998+1562+E.A. Mueller+M.M. Moore+D.C.R. Kerr"}}}}